Detailed information of SNP:
|
SNP ID:
sf0402176387(Gbrowse)
Chromosome: chr04 Position: 2176387 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1383 | 73.32% | 26.68% |
| All Indica | 791 | 91.91% | 8.09% |
| All Japonica | 471 | 36.31% | 63.69% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 89.43% | 10.57% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 209 | 90.91% | 9.09% |
| Temperate Japonica | 315 | 16.51% | 83.49% |
| Tropical Japonica | 92 | 92.39% | 7.61% |
| Japonica Intermediate | 64 | 53.12% | 46.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402176387 | T->C | LOC_Os04g04560(LOC_Os04g04560.1) | Non-Synonymous SNP |