Detailed information of SNP:
|
SNP ID:
sf0402199618(Gbrowse)
Chromosome: chr04 Position: 2199618 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1372 | 93.95% | 6.05% |
| All Indica | 756 | 89.81% | 10.19% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 348 | 87.07% | 12.93% |
| Indica II | 204 | 88.73% | 11.27% |
| Indica Intermediate | 204 | 95.59% | 4.41% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402199618 | G->A | INTERGENIC | None |