Detailed information of SNP:
|
SNP ID:
sf0402209600(Gbrowse)
Chromosome: chr04 Position: 2209600 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1356 | 67.55% | 32.45% |
| All Indica | 760 | 53.55% | 46.45% |
| All Japonica | 478 | 98.12% | 1.88% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 359 | 49.58% | 50.42% |
| Indica II | 198 | 55.56% | 44.44% |
| Indica Intermediate | 203 | 58.62% | 41.38% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 79 | 89.87% | 10.13% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 37 | 48.65% | 51.35% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402209600 | A->C | INTERGENIC | None |