Detailed information of SNP:
|
SNP ID:
sf0402213043(Gbrowse)
Chromosome: chr04 Position: 2213043 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1272 | 63.99% | 36.01% |
| All Indica | 676 | 46.45% | 53.55% |
| All Japonica | 488 | 94.67% | 5.33% |
| Aus | 63 | 17.46% | 82.54% |
| Indica I | 317 | 49.84% | 50.16% |
| Indica II | 182 | 42.31% | 57.69% |
| Indica Intermediate | 177 | 44.63% | 55.37% |
| Temperate Japonica | 333 | 99.10% | 0.90% |
| Tropical Japonica | 89 | 76.40% | 23.60% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 10 | 80.00% | 20.00% |
| Intermediate | 35 | 54.29% | 45.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402213043 | C->T | INTERGENIC | None |