Detailed information of SNP:
|
SNP ID:
sf0402217531(Gbrowse)
Chromosome: chr04 Position: 2217531 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 81.23% | 18.77% |
| All Indica | 797 | 91.84% | 8.16% |
| All Japonica | 492 | 60.16% | 39.84% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 99.20% | 0.80% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 73.93% | 26.07% |
| Temperate Japonica | 333 | 48.95% | 51.05% |
| Tropical Japonica | 92 | 93.48% | 6.52% |
| Japonica Intermediate | 67 | 70.15% | 29.85% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402217531 | G->C | LOC_Os04g04640(LOC_Os04g04640.1) | INTRON |