Detailed information of SNP:
|
SNP ID:
sf0402229667(Gbrowse)
Chromosome: chr04 Position: 2229667 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 95.84% | 4.16% |
| All Indica | 798 | 94.36% | 5.64% |
| All Japonica | 496 | 97.18% | 2.82% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 80.95% | 19.05% |
| Temperate Japonica | 334 | 95.81% | 4.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402229667 | C->T | LOC_Os04g04640(LOC_Os04g04640.1) | INTRON |