Detailed information of SNP:
|
SNP ID:
sf0402232922(Gbrowse)
Chromosome: chr04 Position: 2232922 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 61.46% | 38.54% |
| All Indica | 796 | 89.45% | 10.55% |
| All Japonica | 496 | 13.51% | 86.49% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 208 | 71.15% | 28.85% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 93 | 53.76% | 46.24% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402232922 | G->A | LOC_Os04g04650(LOC_Os04g04650.1) | Synonymous |