Detailed information of SNP:
|
SNP ID:
sf0402233312(Gbrowse)
Chromosome: chr04 Position: 2233312 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 55.37% | 44.63% |
| All Indica | 797 | 85.95% | 14.05% |
| All Japonica | 496 | 12.70% | 87.30% |
| Aus | 66 | 16.67% | 83.33% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 209 | 61.72% | 38.28% |
| Temperate Japonica | 334 | 2.40% | 97.60% |
| Tropical Japonica | 94 | 50.00% | 50.00% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402233312 | G->A | INTERGENIC | None |