Detailed information of SNP:
|
SNP ID:
sf0402240303(Gbrowse)
Chromosome: chr04 Position: 2240303 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 61.60% | 38.40% |
| All Indica | 796 | 89.32% | 10.68% |
| All Japonica | 495 | 13.54% | 86.46% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 208 | 71.15% | 28.85% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 53.19% | 46.81% |
| Japonica Intermediate | 66 | 10.61% | 89.39% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402240303 | G->A | LOC_Os04g04660(LOC_Os04g04660.1) | Synonymous |