Detailed information of SNP:
|
SNP ID:
sf0402247822(Gbrowse)
Chromosome: chr04 Position: 2247822 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 68.30% | 31.70% |
| All Indica | 794 | 96.47% | 3.53% |
| All Japonica | 488 | 19.47% | 80.53% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 371 | 97.84% | 2.16% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 328 | 6.71% | 93.29% |
| Tropical Japonica | 93 | 63.44% | 36.56% |
| Japonica Intermediate | 67 | 20.90% | 79.10% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402247822 | A->G | LOC_Os04g04670(LOC_Os04g04670.1) | Synonymous |