Detailed information of SNP:
|
SNP ID:
sf0402251652(Gbrowse)
Chromosome: chr04 Position: 2251652 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1386 | 54.76% | 45.24% |
| All Indica | 772 | 87.56% | 12.44% |
| All Japonica | 493 | 9.53% | 90.47% |
| Aus | 66 | 15.15% | 84.85% |
| Indica I | 359 | 98.89% | 1.11% |
| Indica II | 211 | 91.94% | 8.06% |
| Indica Intermediate | 202 | 62.87% | 37.13% |
| Temperate Japonica | 333 | 1.20% | 98.80% |
| Tropical Japonica | 92 | 42.39% | 57.61% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402251652 | A->G | LOC_Os04g04690(LOC_Os04g04690.1) | Non-Synonymous SNP |