Detailed information of SNP:
|
SNP ID:
sf0402251714(Gbrowse)
Chromosome: chr04 Position: 2251714 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 54.29% | 45.71% |
| All Indica | 782 | 86.57% | 13.43% |
| All Japonica | 494 | 9.51% | 90.49% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 367 | 97.55% | 2.45% |
| Indica II | 210 | 92.86% | 7.14% |
| Indica Intermediate | 205 | 60.49% | 39.51% |
| Temperate Japonica | 333 | 1.20% | 98.80% |
| Tropical Japonica | 93 | 41.94% | 58.06% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402251714 | A->G | LOC_Os04g04690(LOC_Os04g04690.1) | Synonymous |