Detailed information of SNP:
|
SNP ID:
sf0402256161(Gbrowse)
Chromosome: chr04 Position: 2256161 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 89.36% | 10.64% |
| All Indica | 799 | 95.24% | 4.76% |
| All Japonica | 497 | 89.54% | 10.46% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402256161 | A->C | LOC_Os04g04710(LOC_Os04g04710.1) | SNPs that disrupt stop codons |