Detailed information of SNP:
|
SNP ID:
sf0402257566(Gbrowse)
Chromosome: chr04 Position: 2257566 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1379 | 55.62% | 44.38% |
| All Indica | 774 | 26.36% | 73.64% |
| All Japonica | 489 | 95.50% | 4.50% |
| Aus | 60 | 93.33% | 6.67% |
| Indica I | 361 | 17.17% | 82.83% |
| Indica II | 206 | 25.24% | 74.76% |
| Indica Intermediate | 207 | 43.48% | 56.52% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 87 | 79.31% | 20.69% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402257566 | C->T | LOC_Os04g04710(LOC_Os04g04710.1) | Non-Synonymous SNP |