Detailed information of SNP:
|
SNP ID:
sf0402259508(Gbrowse)
Chromosome: chr04 Position: 2259508 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1402 | 74.75% | 25.25% |
| All Indica | 786 | 84.35% | 15.65% |
| All Japonica | 494 | 67.81% | 32.19% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 369 | 95.66% | 4.34% |
| Indica II | 208 | 86.54% | 13.46% |
| Indica Intermediate | 209 | 62.20% | 37.80% |
| Temperate Japonica | 332 | 71.08% | 28.92% |
| Tropical Japonica | 94 | 69.15% | 30.85% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402259508 | T->C | INTERGENIC | None |