Detailed information of SNP:
|
SNP ID:
sf0402259594(Gbrowse)
Chromosome: chr04 Position: 2259594 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1352 | 78.18% | 21.82% |
| All Indica | 751 | 90.68% | 9.32% |
| All Japonica | 480 | 54.17% | 45.83% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 345 | 88.41% | 11.59% |
| Indica II | 206 | 94.66% | 5.34% |
| Indica Intermediate | 200 | 90.50% | 9.50% |
| Temperate Japonica | 326 | 37.12% | 62.88% |
| Tropical Japonica | 88 | 96.59% | 3.41% |
| Japonica Intermediate | 66 | 81.82% | 18.18% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402259594 | C->G | INTERGENIC | None |