Detailed information of SNP:
|
SNP ID:
sf0402276397(Gbrowse)
Chromosome: chr04 Position: 2276397 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1369 | 80.64% | 19.36% |
| All Indica | 756 | 81.61% | 18.39% |
| All Japonica | 493 | 76.88% | 23.12% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 359 | 86.07% | 13.93% |
| Indica II | 195 | 72.82% | 27.18% |
| Indica Intermediate | 202 | 82.18% | 17.82% |
| Temperate Japonica | 335 | 79.10% | 20.90% |
| Tropical Japonica | 91 | 63.74% | 36.26% |
| Japonica Intermediate | 67 | 83.58% | 16.42% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 69.23% | 30.77% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402276397 | A->G | INTERGENIC | None |