Detailed information of SNP:
|
SNP ID:
sf0402278727(Gbrowse)
Chromosome: chr04 Position: 2278727 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1372 | 65.01% | 34.99% |
| All Indica | 798 | 89.72% | 10.28% |
| All Japonica | 467 | 29.76% | 70.24% |
| Aus | 60 | 16.67% | 83.33% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 210 | 69.05% | 30.95% |
| Temperate Japonica | 315 | 10.48% | 89.52% |
| Tropical Japonica | 92 | 73.91% | 26.09% |
| Japonica Intermediate | 60 | 63.33% | 36.67% |
| Group VI/Aromatic | 6 | 16.67% | 83.33% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402278727 | T->C | LOC_Os04g04750(LOC_Os04g04750.1) | INTRON |