Detailed information of SNP:
|
SNP ID:
sf0402280171(Gbrowse)
Chromosome: chr04 Position: 2280171 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 57.86% | 42.14% |
| All Indica | 799 | 89.11% | 10.89% |
| All Japonica | 497 | 16.70% | 83.30% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 66.35% | 33.65% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402280171 | G->A | LOC_Os04g04750(LOC_Os04g04750.1) | INTRON |