Detailed information of SNP:
|
SNP ID:
sf0402282829(Gbrowse)
Chromosome: chr04 Position: 2282829 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 50.07% | 49.93% |
| All Indica | 796 | 18.97% | 81.03% |
| All Japonica | 497 | 90.95% | 9.05% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 9.65% | 90.35% |
| Indica II | 212 | 5.66% | 94.34% |
| Indica Intermediate | 211 | 48.82% | 51.18% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402282829 | T->C | INTERGENIC | None |