Detailed information of SNP:
|
SNP ID:
sf0402285821(Gbrowse)
Chromosome: chr04 Position: 2285821 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1403 | 62.22% | 37.78% |
| All Indica | 786 | 38.04% | 61.96% |
| All Japonica | 496 | 93.75% | 6.25% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 40.71% | 59.29% |
| Indica II | 211 | 20.38% | 79.62% |
| Indica Intermediate | 209 | 51.20% | 48.80% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 69.89% | 30.11% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402285821 | G->C | INTERGENIC | None |