Detailed information of SNP:



SNP ID: sf0402285821(Gbrowse)

Chromosome: chr04

Position: 2285821
Major allele: G

Minor allele: C

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of C(minor allele)
All1403 62.22% 37.78%
All Indica786 38.04% 61.96%
All Japonica496 93.75% 6.25%
Aus67 100.00% 0.00%
Indica I366 40.71% 59.29%
Indica II211 20.38% 79.62%
Indica Intermediate209 51.20% 48.80%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica93 69.89% 30.11%
Japonica Intermediate68 97.06% 2.94%
Group VI/Aromatic14 92.86% 7.14%
Intermediate40 72.50% 27.50%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0402285821 G->C INTERGENIC None