Detailed information of SNP:
|
SNP ID:
sf0402286150(Gbrowse)
Chromosome: chr04 Position: 2286150 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 77.69% | 22.31% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 495 | 40.81% | 59.19% |
| Aus | 63 | 87.30% | 12.70% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 334 | 28.14% | 71.86% |
| Tropical Japonica | 93 | 88.17% | 11.83% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402286150 | C->A | INTERGENIC | None |