Detailed information of SNP:
|
SNP ID:
sf0402307129(Gbrowse)
Chromosome: chr04 Position: 2307129 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 85.37% | 14.63% |
| All Indica | 791 | 96.71% | 3.29% |
| All Japonica | 494 | 64.37% | 35.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 204 | 96.57% | 3.43% |
| Temperate Japonica | 334 | 51.20% | 48.80% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 67 | 83.58% | 16.42% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402307129 | T->C | INTERGENIC | None |