Detailed information of SNP:
|
SNP ID:
sf0402324116(Gbrowse)
Chromosome: chr04 Position: 2324116 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1397 | 93.49% | 6.51% |
| All Indica | 786 | 92.37% | 7.63% |
| All Japonica | 490 | 95.51% | 4.49% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 372 | 93.82% | 6.18% |
| Indica II | 209 | 93.30% | 6.70% |
| Indica Intermediate | 205 | 88.78% | 11.22% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 90 | 77.78% | 22.22% |
| Japonica Intermediate | 65 | 98.46% | 1.54% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402324116 | T->G | INTERGENIC | None |