Detailed information of SNP:



SNP ID: sf0402342131(Gbrowse)

Chromosome: chr04

Position: 2342131
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1412 98.87% 1.13%
All Indica799 99.87% 0.13%
All Japonica491 97.15% 2.85%
Aus66 98.48% 1.52%
Indica I375 100.00% 0.00%
Indica II213 99.53% 0.47%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica329 96.05% 3.95%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0402342131 G->A INTERGENIC None