Detailed information of SNP:
|
SNP ID:
sf0402369212(Gbrowse)
Chromosome: chr04 Position: 2369212 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 78.51% | 21.49% |
| All Indica | 795 | 94.59% | 5.41% |
| All Japonica | 490 | 51.43% | 48.57% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 207 | 86.96% | 13.04% |
| Temperate Japonica | 333 | 39.34% | 60.66% |
| Tropical Japonica | 91 | 86.81% | 13.19% |
| Japonica Intermediate | 66 | 63.64% | 36.36% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402369212 | T->C | INTERGENIC | None |