Detailed information of SNP:
|
SNP ID:
sf0402369247(Gbrowse)
Chromosome: chr04 Position: 2369247 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 91.73% | 8.27% |
| All Indica | 799 | 91.61% | 8.39% |
| All Japonica | 493 | 92.49% | 7.51% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 78.67% | 21.33% |
| Temperate Japonica | 333 | 97.60% | 2.40% |
| Tropical Japonica | 93 | 79.57% | 20.43% |
| Japonica Intermediate | 67 | 85.07% | 14.93% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402369247 | A->C | INTERGENIC | None |