Detailed information of SNP:
|
SNP ID:
sf0402369499(Gbrowse)
Chromosome: chr04 Position: 2369499 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 53.89% | 46.11% |
| All Indica | 798 | 83.71% | 16.29% |
| All Japonica | 496 | 12.50% | 87.50% |
| Aus | 66 | 18.18% | 81.82% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 210 | 53.33% | 46.67% |
| Temperate Japonica | 334 | 1.50% | 98.50% |
| Tropical Japonica | 94 | 53.19% | 46.81% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402369499 | C->T | INTERGENIC | None |