Detailed information of SNP:
|
SNP ID:
sf0402369614(Gbrowse)
Chromosome: chr04 Position: 2369614 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 91.78% | 8.22% |
| All Indica | 793 | 92.06% | 7.94% |
| All Japonica | 495 | 92.12% | 7.88% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 373 | 96.51% | 3.49% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 208 | 79.33% | 20.67% |
| Temperate Japonica | 333 | 97.90% | 2.10% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402369614 | T->C | INTERGENIC | None |