Detailed information of SNP:
|
SNP ID:
sf0402372101(Gbrowse)
Chromosome: chr04 Position: 2372101 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1389 | 85.24% | 14.76% |
| All Indica | 777 | 96.78% | 3.22% |
| All Japonica | 491 | 64.15% | 35.85% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 355 | 96.34% | 3.66% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 335 | 51.94% | 48.06% |
| Tropical Japonica | 90 | 96.67% | 3.33% |
| Japonica Intermediate | 66 | 81.82% | 18.18% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402372101 | T->C | LOC_Os04g04930(LOC_Os04g04930.1) | Non-Synonymous SNP |