Detailed information of SNP:
|
SNP ID:
sf0402373251(Gbrowse)
Chromosome: chr04 Position: 2373251 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1382 | 80.68% | 19.32% |
| All Indica | 780 | 96.15% | 3.85% |
| All Japonica | 480 | 54.58% | 45.42% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 362 | 95.86% | 4.14% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 206 | 96.60% | 3.40% |
| Temperate Japonica | 324 | 44.75% | 55.25% |
| Tropical Japonica | 90 | 82.22% | 17.78% |
| Japonica Intermediate | 66 | 65.15% | 34.85% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402373251 | A->G | LOC_Os04g04930(LOC_Os04g04930.1) | Non-Synonymous SNP |