Detailed information of SNP:
|
SNP ID:
sf0402373530(Gbrowse)
Chromosome: chr04 Position: 2373530 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 93.00% | 7.00% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 495 | 81.82% | 18.18% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 80.48% | 19.52% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 12 | 83.33% | 16.67% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402373530 | C->T | INTERGENIC | None |