Detailed information of SNP:
|
SNP ID:
sf0402373902(Gbrowse)
Chromosome: chr04 Position: 2373902 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1389 | 84.31% | 15.69% |
| All Indica | 787 | 98.09% | 1.91% |
| All Japonica | 480 | 58.75% | 41.25% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 370 | 97.84% | 2.16% |
| Indica II | 210 | 99.52% | 0.48% |
| Indica Intermediate | 207 | 97.10% | 2.90% |
| Temperate Japonica | 328 | 48.17% | 51.83% |
| Tropical Japonica | 88 | 84.09% | 15.91% |
| Japonica Intermediate | 64 | 78.12% | 21.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402373902 | T->G | INTERGENIC | None |