Detailed information of SNP:
|
SNP ID:
sf0402374036(Gbrowse)
Chromosome: chr04 Position: 2374036 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 88.59% | 11.41% |
| All Indica | 785 | 83.82% | 16.18% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 62.50% | 37.50% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 203 | 80.79% | 19.21% |
| Indica Intermediate | 207 | 71.01% | 28.99% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402374036 | G->A | INTERGENIC | None |