Detailed information of SNP:
|
SNP ID:
sf0402376203(Gbrowse)
Chromosome: chr04 Position: 2376203 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 82.02% | 17.98% |
| All Indica | 777 | 72.33% | 27.67% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 68.18% | 31.82% |
| Indica I | 368 | 83.42% | 16.58% |
| Indica II | 204 | 65.69% | 34.31% |
| Indica Intermediate | 205 | 59.02% | 40.98% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402376203 | G->A | LOC_Os04g04940(LOC_Os04g04940.1) | INTRON |