Detailed information of SNP:
|
SNP ID:
sf0402376820(Gbrowse)
Chromosome: chr04 Position: 2376820 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 80.36% | 19.64% |
| All Indica | 782 | 69.57% | 30.43% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 65 | 64.62% | 35.38% |
| Indica I | 371 | 82.21% | 17.79% |
| Indica II | 207 | 63.29% | 36.71% |
| Indica Intermediate | 204 | 52.94% | 47.06% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402376820 | C->T | LOC_Os04g04940(LOC_Os04g04940.1) | Non-Synonymous SNP |