Detailed information of SNP:
|
SNP ID:
sf0402379908(Gbrowse)
Chromosome: chr04 Position: 2379908 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 70.88% | 29.12% |
| All Indica | 789 | 81.62% | 18.38% |
| All Japonica | 497 | 52.11% | 47.89% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 369 | 83.20% | 16.80% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 208 | 67.31% | 32.69% |
| Temperate Japonica | 335 | 47.76% | 52.24% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402379908 | A->G | INTERGENIC | None |