Detailed information of SNP:
|
SNP ID:
sf0402381923(Gbrowse)
Chromosome: chr04 Position: 2381923 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 94.13% | 5.87% |
| All Indica | 798 | 92.61% | 7.39% |
| All Japonica | 495 | 98.18% | 1.82% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 84.76% | 15.24% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402381923 | A->G | INTERGENIC | None |