Detailed information of SNP:
|
SNP ID:
sf0402382797(Gbrowse)
Chromosome: chr04 Position: 2382797 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1200 | 89.58% | 10.42% |
| All Indica | 596 | 79.19% | 20.81% |
| All Japonica | 487 | 100.00% | 0.00% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 258 | 59.69% | 40.31% |
| Indica II | 163 | 93.25% | 6.75% |
| Indica Intermediate | 175 | 94.86% | 5.14% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 85 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402382797 | C->T | INTERGENIC | None |