Detailed information of SNP:
|
SNP ID:
sf0402385430(Gbrowse)
Chromosome: chr04 Position: 2385430 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 53.60% | 46.40% |
| All Indica | 799 | 87.61% | 12.39% |
| All Japonica | 495 | 7.88% | 92.12% |
| Aus | 66 | 3.03% | 96.97% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 70.62% | 29.38% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 66 | 3.03% | 96.97% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402385430 | T->C | INTERGENIC | None |