Detailed information of SNP:
|
SNP ID:
sf0402389575(Gbrowse)
Chromosome: chr04 Position: 2389575 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1388 | 61.31% | 38.69% |
| All Indica | 799 | 90.11% | 9.89% |
| All Japonica | 466 | 19.74% | 80.26% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 68.25% | 31.75% |
| Temperate Japonica | 310 | 5.16% | 94.84% |
| Tropical Japonica | 89 | 69.66% | 30.34% |
| Japonica Intermediate | 67 | 20.90% | 79.10% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402389575 | A->T | LOC_Os04g04950(LOC_Os04g04950.1) | INTRON |