Detailed information of SNP:
|
SNP ID:
sf0402389622(Gbrowse)
Chromosome: chr04 Position: 2389622 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 53.50% | 46.50% |
| All Indica | 799 | 86.86% | 13.14% |
| All Japonica | 494 | 7.09% | 92.91% |
| Aus | 66 | 4.55% | 95.45% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 59.72% | 40.28% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 91 | 35.16% | 64.84% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402389622 | A->T | LOC_Os04g04950(LOC_Os04g04950.1) | INTRON |