Detailed information of SNP:
|
SNP ID:
sf0402389753(Gbrowse)
Chromosome: chr04 Position: 2389753 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 53.67% | 46.33% |
| All Indica | 799 | 86.98% | 13.02% |
| All Japonica | 495 | 7.27% | 92.73% |
| Aus | 66 | 4.55% | 95.45% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 59.72% | 40.28% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 92 | 34.78% | 65.22% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402389753 | G->A | LOC_Os04g04950(LOC_Os04g04950.1) | INTRON |