Detailed information of SNP:
|
SNP ID:
sf0402389892(Gbrowse)
Chromosome: chr04 Position: 2389892 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 63.94% | 36.06% |
| All Indica | 799 | 87.36% | 12.64% |
| All Japonica | 496 | 35.28% | 64.72% |
| Aus | 66 | 4.55% | 95.45% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 60.19% | 39.81% |
| Temperate Japonica | 334 | 23.95% | 76.05% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402389892 | A->G | LOC_Os04g04950(LOC_Os04g04950.1) | INTRON |