Detailed information of SNP:
|
SNP ID:
sf0402391687(Gbrowse)
Chromosome: chr04 Position: 2391687 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 53.37% | 46.63% |
| All Indica | 799 | 82.48% | 17.52% |
| All Japonica | 489 | 15.13% | 84.87% |
| Aus | 66 | 3.03% | 96.97% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 54.03% | 45.97% |
| Temperate Japonica | 329 | 12.77% | 87.23% |
| Tropical Japonica | 93 | 32.26% | 67.74% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402391687 | T->A | LOC_Os04g04950(LOC_Os04g04950.1) | INTRON |