Detailed information of SNP:
|
SNP ID:
sf0402395669(Gbrowse)
Chromosome: chr04 Position: 2395669 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 69.94% | 30.06% |
| All Indica | 799 | 98.37% | 1.63% |
| All Japonica | 485 | 20.00% | 80.00% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 329 | 2.74% | 97.26% |
| Tropical Japonica | 88 | 78.41% | 21.59% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402395669 | G->T | INTERGENIC | None |