Detailed information of SNP:
|
SNP ID:
sf0402395996(Gbrowse)
Chromosome: chr04 Position: 2395996 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 83.85% | 16.15% |
| All Indica | 793 | 99.37% | 0.63% |
| All Japonica | 483 | 57.14% | 42.86% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 210 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 328 | 43.60% | 56.40% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 63 | 69.84% | 30.16% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402395996 | T->C | INTERGENIC | None |