Detailed information of SNP:
|
SNP ID:
sf0402397091(Gbrowse)
Chromosome: chr04 Position: 2397091 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 83.12% | 16.88% |
| All Indica | 788 | 97.59% | 2.41% |
| All Japonica | 495 | 58.59% | 41.41% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 370 | 97.84% | 2.16% |
| Indica II | 210 | 98.10% | 1.90% |
| Indica Intermediate | 208 | 96.63% | 3.37% |
| Temperate Japonica | 333 | 45.05% | 54.95% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402397091 | G->A | INTERGENIC | None |