Detailed information of SNP:
|
SNP ID:
sf0402397130(Gbrowse)
Chromosome: chr04 Position: 2397130 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 55.49% | 44.51% |
| All Indica | 794 | 66.50% | 33.50% |
| All Japonica | 495 | 36.16% | 63.84% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 373 | 62.47% | 37.53% |
| Indica II | 212 | 71.70% | 28.30% |
| Indica Intermediate | 209 | 68.42% | 31.58% |
| Temperate Japonica | 334 | 26.65% | 73.35% |
| Tropical Japonica | 93 | 70.97% | 29.03% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402397130 | T->C | INTERGENIC | None |