Detailed information of SNP:
|
SNP ID:
sf0402399137(Gbrowse)
Chromosome: chr04 Position: 2399137 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1387 | 60.99% | 39.01% |
| All Indica | 797 | 94.86% | 5.14% |
| All Japonica | 476 | 12.18% | 87.82% |
| Aus | 60 | 8.33% | 91.67% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 210 | 84.76% | 15.24% |
| Temperate Japonica | 314 | 5.41% | 94.59% |
| Tropical Japonica | 94 | 39.36% | 60.64% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402399137 | G->A | INTERGENIC | None |